ClinVar Miner

Submissions for variant NM_000251.2(MSH2):c.2393A>G (p.Asn798Ser) (rs786204073)

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000167962 SCV000218610 uncertain significance Hereditary nonpolyposis colorectal neoplasms 2019-11-11 criteria provided, single submitter clinical testing This sequence change replaces asparagine with serine at codon 798 of the MSH2 protein (p.Asn798Ser). The asparagine residue is moderately conserved and there is a small physicochemical difference between asparagine and serine. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with MSH2-related disease. ClinVar contains an entry for this variant (Variation ID: 188109). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The serine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Color RCV000773069 SCV000906491 uncertain significance Hereditary cancer-predisposing syndrome 2019-01-17 criteria provided, single submitter clinical testing
Mendelics RCV000986688 SCV001135758 uncertain significance Lynch syndrome I 2019-05-28 criteria provided, single submitter clinical testing

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