ClinVar Miner

Submissions for variant NM_000251.3(MSH2):c.1617T>C (p.Phe539=)

gnomAD frequency: 0.00003  dbSNP: rs730881759
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV001703535 SCV000515567 likely benign not provided 2020-10-18 criteria provided, single submitter clinical testing
Ambry Genetics RCV000569919 SCV000669710 likely benign Hereditary cancer-predisposing syndrome 2015-02-10 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Color Diagnostics, LLC DBA Color Health RCV000569919 SCV000684955 likely benign Hereditary cancer-predisposing syndrome 2016-11-03 criteria provided, single submitter clinical testing
Invitae RCV000877461 SCV001020200 likely benign Hereditary nonpolyposis colorectal neoplasms 2024-01-09 criteria provided, single submitter clinical testing
All of Us Research Program, National Institutes of Health RCV003996012 SCV004833959 likely benign Lynch syndrome 2023-06-26 criteria provided, single submitter clinical testing

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