ClinVar Miner

Submissions for variant NM_000251.3(MSH2):c.1759+5A>T

dbSNP: rs1396571187
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001223537 SCV001395693 likely benign Hereditary nonpolyposis colorectal neoplasms 2023-12-06 criteria provided, single submitter clinical testing
GeneDx RCV001760212 SCV001998196 uncertain significance not provided 2019-10-09 criteria provided, single submitter clinical testing Not observed in large population cohorts (Lek et al., 2016); Has not been previously published as pathogenic or benign to our knowledge; In-silico analysis, which includes splice predictors and evolutionary conservation, is inconclusive as to whether the variant alters gene splicing. In the absence of RNA/functional studies, the actual effect of this sequence change is unknown.
Ambry Genetics RCV002411827 SCV002716188 likely benign Hereditary cancer-predisposing syndrome 2020-05-13 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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