ClinVar Miner

Submissions for variant NM_000251.3(MSH2):c.762T>C (p.Asn254=)

gnomAD frequency: 0.00002  dbSNP: rs587779180
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Total submissions: 10
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000213494 SCV000274308 likely benign Hereditary cancer-predisposing syndrome 2015-09-28 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
GeneDx RCV000759121 SCV000513653 likely benign not provided 2021-04-19 criteria provided, single submitter clinical testing
Invitae RCV001088125 SCV000559207 likely benign Hereditary nonpolyposis colorectal neoplasms 2024-01-18 criteria provided, single submitter clinical testing
Color Diagnostics, LLC DBA Color Health RCV000213494 SCV000690129 likely benign Hereditary cancer-predisposing syndrome 2016-03-23 criteria provided, single submitter clinical testing
Counsyl RCV000662531 SCV000785101 likely benign Lynch syndrome 1 2017-04-18 criteria provided, single submitter clinical testing
Quest Diagnostics Nichols Institute San Juan Capistrano RCV000759121 SCV000888230 likely benign not provided 2017-12-11 criteria provided, single submitter clinical testing
Myriad Genetics, Inc. RCV000662531 SCV004018334 benign Lynch syndrome 1 2023-03-21 criteria provided, single submitter clinical testing This variant is considered benign. This variant is a silent/synonymous amino acid change and it is not expected to impact splicing.
PreventionGenetics, part of Exact Sciences RCV004537298 SCV004717926 likely benign MSH2-related disorder 2020-11-10 criteria provided, single submitter clinical testing This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).
All of Us Research Program, National Institutes of Health RCV003997181 SCV004829104 likely benign Lynch syndrome 2023-11-30 criteria provided, single submitter clinical testing
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center RCV000759121 SCV001966411 likely benign not provided no assertion criteria provided clinical testing

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