Total submissions: 9
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Labcorp Genetics |
RCV000234108 | SCV000284540 | benign | Neurofibromatosis, type 2 | 2024-01-31 | criteria provided, single submitter | clinical testing | |
Illumina Laboratory Services, |
RCV000234108 | SCV000437753 | likely benign | Neurofibromatosis, type 2 | 2016-06-14 | criteria provided, single submitter | clinical testing | |
Eurofins Ntd Llc |
RCV000732056 | SCV000859934 | uncertain significance | not provided | 2018-03-13 | criteria provided, single submitter | clinical testing | |
Women's Health and Genetics/Laboratory Corporation of America, |
RCV000780549 | SCV000917897 | benign | not specified | 2018-05-03 | criteria provided, single submitter | clinical testing | Variant summary: NF2 c.1123-6C>T alters a non-conserved nucleotide located close to a canonical splice site and therefore could affect mRNA splicing, leading to a significantly altered protein sequence. 4/5 computational tools predict no significant impact on normal splicing. However, these predictions have yet to be confirmed by functional studies. The observed variant frequency within African control individuals in the gnomAD database is approximately 337.92 fold of the estimated maximal expected allele frequency for a pathogenic variant in NF2 causing Neurofibromatosis Type 2 phenotype (1.9e-05), strongly suggesting that the variant is a benign polymorphism found primarily in populations of African origin. To our knowledge, no occurrence of c.1123-6C>T in individuals affected with Neurofibromatosis Type 2 and no experimental evidence demonstrating its impact on protein function have been reported. Two clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation, and classified the variant as benign/likely benign. Another lab classified this variant as VUS, also without evidence for independent evaluation. Based on the evidence outlined above, the variant was classified as benign. |
Gene |
RCV000732056 | SCV001826533 | likely benign | not provided | 2021-03-29 | criteria provided, single submitter | clinical testing | |
Genome- |
RCV000234108 | SCV002045405 | likely benign | Neurofibromatosis, type 2 | 2021-11-07 | criteria provided, single submitter | clinical testing | |
Sema4, |
RCV002258836 | SCV002528166 | benign | Hereditary cancer-predisposing syndrome | 2021-06-16 | criteria provided, single submitter | curation | |
KCCC/NGS Laboratory, |
RCV000234108 | SCV004016465 | benign | Neurofibromatosis, type 2 | 2023-07-07 | criteria provided, single submitter | clinical testing | |
Ambry Genetics | RCV002258836 | SCV004849165 | uncertain significance | Hereditary cancer-predisposing syndrome | 2017-05-17 | criteria provided, single submitter | clinical testing | The c.1123-6C>T intronic alteration consists of a C to T substitution 6 nucleotides before coding exon 12 in the NF2 gene. Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. |