ClinVar Miner

Submissions for variant NM_000268.4(NF2):c.1364A>G (p.Lys455Arg)

gnomAD frequency: 0.00001  dbSNP: rs1318882444
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000632634 SCV000753819 uncertain significance Neurofibromatosis, type 2 2024-01-19 criteria provided, single submitter clinical testing This sequence change replaces lysine, which is basic and polar, with arginine, which is basic and polar, at codon 455 of the NF2 protein (p.Lys455Arg). This variant is present in population databases (no rsID available, gnomAD 0.001%). This variant has not been reported in the literature in individuals affected with NF2-related conditions. ClinVar contains an entry for this variant (Variation ID: 527689). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt NF2 protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002385990 SCV002696041 uncertain significance Hereditary cancer-predisposing syndrome 2023-08-08 criteria provided, single submitter clinical testing The p.K455R variant (also known as c.1364A>G), located in coding exon 13 of the NF2 gene, results from an A to G substitution at nucleotide position 1364. The lysine at codon 455 is replaced by arginine, an amino acid with highly similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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