ClinVar Miner

Submissions for variant NM_000271.5(NPC1):c.1138C>T (p.Leu380Phe)

gnomAD frequency: 0.00001  dbSNP: rs1435915496
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Counsyl RCV000670699 SCV000795589 uncertain significance Niemann-Pick disease, type C1 2017-11-09 criteria provided, single submitter clinical testing
Invitae RCV000670699 SCV000959043 uncertain significance Niemann-Pick disease, type C1 2021-09-01 criteria provided, single submitter clinical testing This sequence change replaces leucine with phenylalanine at codon 380 of the NPC1 protein (p.Leu380Phe). The leucine residue is highly conserved and there is a small physicochemical difference between leucine and phenylalanine. This variant is not present in population databases (ExAC no frequency). This missense change has been observed in individual(s) with Niemann-Pick disease type C (PMID: 12955717). ClinVar contains an entry for this variant (Variation ID: 554968). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Natera, Inc. RCV000670699 SCV001455876 uncertain significance Niemann-Pick disease, type C1 2020-09-16 no assertion criteria provided clinical testing

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