ClinVar Miner

Submissions for variant NM_000276.4(OCRL):c.428C>T (p.Ser143Phe)

gnomAD frequency: 0.00014  dbSNP: rs760751280
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Baylor Genetics RCV001329156 SCV001520505 uncertain significance Dent disease type 2 2020-04-02 criteria provided, single submitter clinical testing This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].
Ambry Genetics RCV004035664 SCV002629606 uncertain significance Nephrolithiasis/nephrocalcinosis 2023-02-16 criteria provided, single submitter clinical testing The c.428C>T (p.S143F) alteration is located in exon 6 (coding exon 6) of the OCRL gene. This alteration results from a C to T substitution at nucleotide position 428, causing the serine (S) at amino acid position 143 to be replaced by a phenylalanine (F). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Fulgent Genetics, Fulgent Genetics RCV002476540 SCV002777680 uncertain significance Dent disease type 2; Lowe syndrome 2021-10-05 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV002546307 SCV003505157 likely benign Lowe syndrome 2025-01-23 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV003938635 SCV004757324 uncertain significance OCRL-related disorder 2024-01-16 no assertion criteria provided clinical testing The OCRL c.428C>T variant is predicted to result in the amino acid substitution p.Ser143Phe. To our knowledge, this variant has not been reported in the literature. This variant is reported in 0.0036% of alleles in individuals of Latino descent in gnomAD, including one hemizygous individual. Although we suspect that this variant may be benign, at this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

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