Total submissions: 2
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Clin |
RCV001199996 | SCV001370835 | pathogenic | Phenylketonuria | 2020-05-14 | reviewed by expert panel | curation | Variant c.1316-2A>C in PAH was found in 1 Chinese patient with Phe levels >120 umol/L (PMID: 26322415). BH4 deficiency was excluded by analysis of urinary pterins and dihydropteridine reductase activity in erythrocytes (PP4-Moderate). Null variant, canonical -2 splice sites, is in a gene where LOF is a known mechanism of disease. Exon skipping disrupts the reading frame. Altered region is critical to protein function. Not predicted to undergo NMD, because coding exon number is 13 out of 13 coding exons (PVS1-Strong). Variant was found in trans with a pathogenic variant p.R241C (PMID: 26322415). All mutations identified in patients were confirmed by analyzing parental DNA via Sanger automated sequencing (PM3). Variant is absent from controls in gnomAD, PAGE, 1000 Genomes, or ESP (PM2). In summary, this variant meets criteria to be classified as pathogenic for PAH. PAH-specific ACMG/AMP criteria applied: PVS1-Strong, PM2, PP4-Moderate, PM3. |
Baylor Genetics | RCV001199996 | SCV004209716 | pathogenic | Phenylketonuria | 2022-12-18 | criteria provided, single submitter | clinical testing |