Total submissions: 1
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Clin |
RCV001375898 | SCV001572862 | likely pathogenic | Phenylketonuria | 2024-09-06 | reviewed by expert panel | curation | The c.684A>C (p.Glu228Asp) variant in PAH is a missense variant in exon 6/13 that is predicted damaging by REVEL (REVEL score 0.688) (PP3_Supporting). It has been previously reported in one individual with PAH deficiency (960μmol/L Phe) with BH4 cofactor deficiency excluded (PMID: 28982351) (PP4_Moderate), who harbored it in trans with the known pathogenic/likely pathogenic variant p.Arg243Gln (ClinVar ID 591) (1pt; PM3_Moderate). A different missense variant at the same site, p.Glu228Lys, is classified as a VUS in ClinVar by the PAH VCEP (ID 120284); thus PM5 is not met. This variant is absent from gnomAD v2.1.1 (PM2_Supporting). In summary, this variant meets criteria to be classified as Likely Pathogenic based on the ACMG/AMP criteria applied, as specified by the ClinGen Phenylketonuria Variant Curation Expert Panel (Specifications Version 2.0): PM2_Supporting, PM3_Moderate, PP4_Moderate, PP3_Supporting. |