Submissions for variant NM_000302.4(PLOD1):c.295G>A (p.Ala99Thr)

gnomAD frequency: 0.26545  dbSNP: rs7551175

Total submissions: 11

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Eurofins Ntd Llc (ga)	RCV000177032	SCV000228844	benign	not specified	2015-05-22	criteria provided, single submitter	clinical testing
PreventionGenetics, part of Exact Sciences	RCV000177032	SCV000303548	benign	not specified		criteria provided, single submitter	clinical testing
Illumina Laboratory Services, Illumina	RCV000276149	SCV000347847	benign	Ehlers-Danlos syndrome, kyphoscoliotic type 1	2018-03-06	criteria provided, single submitter	clinical testing	This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
GeneDx	RCV000177032	SCV000521253	benign	not specified	2016-10-04	criteria provided, single submitter	clinical testing	This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories	RCV000276149	SCV000604856	benign	Ehlers-Danlos syndrome, kyphoscoliotic type 1	2023-11-29	criteria provided, single submitter	clinical testing
Ambry Genetics	RCV002314625	SCV000738310	benign	Familial thoracic aortic aneurysm and aortic dissection	2015-01-29	criteria provided, single submitter	clinical testing	This alteration is classified as benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Invitae	RCV000276149	SCV001718709	benign	Ehlers-Danlos syndrome, kyphoscoliotic type 1	2024-02-01	criteria provided, single submitter	clinical testing
Genome Diagnostics Laboratory, The Hospital for Sick Children	RCV002277386	SCV002566022	benign	Ehlers-Danlos syndrome	2022-07-14	criteria provided, single submitter	clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp	RCV000177032	SCV003928924	likely benign	not specified	2023-04-09	criteria provided, single submitter	clinical testing
Genome Diagnostics Laboratory, Amsterdam University Medical Center	RCV000177032	SCV001807909	benign	not specified		no assertion criteria provided	clinical testing
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+	RCV000177032	SCV001951682	benign	not specified		no assertion criteria provided	clinical testing