Submissions for variant NM_000313.4(PROS1):c.301C>T (p.Arg101Cys)

Total submissions: 2

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Labcorp Genetics (formerly Invitae), Labcorp	RCV003110564	SCV003782300	uncertain significance	Thrombophilia due to protein S deficiency, autosomal recessive	2025-01-13	criteria provided, single submitter	clinical testing	This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 101 of the PROS1 protein (p.Arg101Cys). This variant is present in population databases (rs778731080, gnomAD 0.01%). This missense change has been observed in individual(s) with clinical features of protein S deficiency (PMID: 16953283, 18954896, 20880255). ClinVar contains an entry for this variant (Variation ID: 2415145). Invitae Evidence Modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed for this missense variant. However, the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on PROS1 protein function. Experimental studies have shown that this missense change affects PROS1 function (PMID: 16953283). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Molecular Genetics and NGS Laboratory, Hospital Fundacion Valle Del Lili	RCV003994523	SCV004812895	likely pathogenic	Thrombophilia due to protein S deficiency, autosomal dominant	2024-04-09	criteria provided, single submitter	clinical testing