ClinVar Miner

Submissions for variant NM_000318.3(PEX2):c.733G>A (p.Ala245Thr)

gnomAD frequency: 0.02536  dbSNP: rs112108739
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Preventiongenetics, part of Exact Sciences RCV000250054 SCV000303577 benign not specified criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001079379 SCV000475112 benign Peroxisome biogenesis disorder 5A (Zellweger) 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Invitae RCV001079379 SCV000652816 benign Peroxisome biogenesis disorder 5A (Zellweger) 2024-02-01 criteria provided, single submitter clinical testing
GeneDx RCV000832320 SCV000974075 benign not provided 2018-06-13 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Natera, Inc. RCV001275870 SCV001461517 benign Zellweger spectrum disorders 2020-09-16 no assertion criteria provided clinical testing

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