ClinVar Miner

Submissions for variant NM_000321.3(RB1):c.1720A>G (p.Lys574Glu)

dbSNP: rs1593529910
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV001012844 SCV001173351 uncertain significance Hereditary cancer-predisposing syndrome 2024-05-29 criteria provided, single submitter clinical testing The p.K574E variant (also known as c.1720A>G), located in coding exon 18 of the RB1 gene, results from an A to G substitution at nucleotide position 1720. The lysine at codon 574 is replaced by glutamic acid, an amino acid with similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV001205411 SCV001376665 uncertain significance Retinoblastoma 2023-10-28 criteria provided, single submitter clinical testing This sequence change replaces lysine, which is basic and polar, with glutamic acid, which is acidic and polar, at codon 574 of the RB1 protein (p.Lys574Glu). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with RB1-related conditions. ClinVar contains an entry for this variant (Variation ID: 819907). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt RB1 protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Mendelics RCV003492200 SCV004232589 uncertain significance Hereditary cancer 2024-01-23 criteria provided, single submitter clinical testing
All of Us Research Program, National Institutes of Health RCV001205411 SCV004833872 uncertain significance Retinoblastoma 2023-05-08 criteria provided, single submitter clinical testing
GeneDx RCV004794476 SCV005414680 uncertain significance not provided 2024-05-24 criteria provided, single submitter clinical testing Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis indicates that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 23516486)

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