ClinVar Miner

Submissions for variant NM_000321.3(RB1):c.2620A>C (p.Lys874Gln)

gnomAD frequency: 0.00001  dbSNP: rs757818801
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000814186 SCV000954587 uncertain significance Retinoblastoma 2022-07-14 criteria provided, single submitter clinical testing This sequence change replaces lysine, which is basic and polar, with glutamine, which is neutral and polar, at codon 874 of the RB1 protein (p.Lys874Gln). This variant is present in population databases (rs757818801, gnomAD 0.0009%). This variant has not been reported in the literature in individuals affected with RB1-related conditions. ClinVar contains an entry for this variant (Variation ID: 657557). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002433970 SCV002745646 likely benign Hereditary cancer-predisposing syndrome 2023-03-10 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Baylor Genetics RCV003461220 SCV004208494 uncertain significance Malignant tumor of urinary bladder 2023-10-20 criteria provided, single submitter clinical testing

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