ClinVar Miner

Submissions for variant NM_000334.4(SCN4A):c.3774+20A>G

gnomAD frequency: 0.00011  dbSNP: rs377552760
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000480061 SCV000573728 uncertain significance not provided 2017-03-03 criteria provided, single submitter clinical testing A variant of uncertain significance has been identified in the SCN4A gene. The c.3774+20 A>G variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge.The c.3774+20 A>G variant is observed in 5/11200 (0.05%) alleles from individuals of Latino background, in the ExAC dataset (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server). This substitution occurs at a position that is not conserved. Several in-silico splice prediction models predict that c.3774+20 A>G may create a cryptic donor site downstream of the natural donor site and lead to abnormal gene splicing. However, in the absence of RNA/functional studies, the actual effect of this sequence change in this individual is unknown. Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic variant or a rare benign variant.
Invitae RCV002056808 SCV002426770 likely benign Familial hyperkalemic periodic paralysis 2024-01-12 criteria provided, single submitter clinical testing

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