ClinVar Miner

Submissions for variant NM_000350.3(ABCA4):c.2911A>C (p.Thr971Pro)

dbSNP: rs745825311
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Blueprint Genetics RCV001074155 SCV001239725 uncertain significance Retinal dystrophy 2019-02-05 criteria provided, single submitter clinical testing
Invitae RCV001227523 SCV001399884 likely pathogenic not provided 2023-09-08 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Thr971 amino acid residue in ABCA4. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 25922843, 28355279, 31934596). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt ABCA4 protein function. ClinVar contains an entry for this variant (Variation ID: 866288). This missense change has been observed in individual(s) with retinal dystrophy (Invitae). This variant is present in population databases (rs745825311, gnomAD 0.003%). This sequence change replaces threonine, which is neutral and polar, with proline, which is neutral and non-polar, at codon 971 of the ABCA4 protein (p.Thr971Pro).

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