ClinVar Miner

Submissions for variant NM_000350.3(ABCA4):c.5549T>C (p.Leu1850Pro)

gnomAD frequency: 0.00001  dbSNP: rs377311148
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Institute of Human Genetics, Univ. Regensburg, Univ. Regensburg RCV000296428 SCV000281930 likely pathogenic Severe early-childhood-onset retinal dystrophy 2016-01-01 criteria provided, single submitter clinical testing
Eurofins Ntd Llc (ga) RCV000790718 SCV000331903 likely pathogenic not provided 2015-09-10 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000790718 SCV001582797 pathogenic not provided 2024-01-31 criteria provided, single submitter clinical testing This sequence change replaces leucine, which is neutral and non-polar, with proline, which is neutral and non-polar, at codon 1850 of the ABCA4 protein (p.Leu1850Pro). This variant is present in population databases (rs377311148, gnomAD 0.0009%). This missense change has been observed in individual(s) with clinical features of autosomal recessive Stargardt disease (PMID: 23755871, 28559085; Invitae). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. ClinVar contains an entry for this variant (Variation ID: 197055). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on ABCA4 protein function. For these reasons, this variant has been classified as Pathogenic.
Institute of Human Genetics, Univ. Regensburg, Univ. Regensburg RCV004816288 SCV005069933 likely pathogenic Retinal dystrophy 2021-01-01 criteria provided, single submitter clinical testing

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