ClinVar Miner

Submissions for variant NM_000350.3(ABCA4):c.5836-11G>A (rs1800739)

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Total submissions: 18
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000152715 SCV000166751 benign not specified 2012-10-10 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
EGL Genetic Diagnostics, Eurofins Clinical Diagnostics RCV000152715 SCV000202101 benign not specified 2017-12-01 criteria provided, single submitter clinical testing
PreventionGenetics,PreventionGenetics RCV000152715 SCV000303769 benign not specified criteria provided, single submitter clinical testing
Illumina Clinical Services Laboratory,Illumina RCV000281163 SCV000359244 likely benign Stargardt Disease, Recessive 2016-06-14 criteria provided, single submitter clinical testing
Illumina Clinical Services Laboratory,Illumina RCV000336246 SCV000359245 likely benign Macular degeneration 2016-06-14 criteria provided, single submitter clinical testing
Illumina Clinical Services Laboratory,Illumina RCV000407106 SCV000359246 likely benign Retinitis Pigmentosa, Recessive 2016-06-14 criteria provided, single submitter clinical testing
Illumina Clinical Services Laboratory,Illumina RCV000313494 SCV000359247 likely benign Cone-Rod Dystrophy, Recessive 2016-06-14 criteria provided, single submitter clinical testing
Illumina Clinical Services Laboratory,Illumina RCV001096229 SCV001252426 benign ABCA4-Related Disorders 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine RCV000152715 SCV001652925 benign not specified 2020-06-04 criteria provided, single submitter clinical testing The c.5836-11G>A variant in ABCA4 is classified as benign because it has been identified in 25.8% (6425/24908) of African chromosomes by gnomAD (http://gnomad.broadinstitute.org). ACMG/AMP Criteria applied: BA1.
Invitae RCV000085763 SCV001723899 benign not provided 2020-11-27 criteria provided, single submitter clinical testing
Nilou-Genome Lab RCV001548896 SCV001768898 benign Stargardt disease 1 2021-07-14 criteria provided, single submitter clinical testing
Nilou-Genome Lab RCV001548897 SCV001768899 benign Retinitis pigmentosa 19 2021-07-14 criteria provided, single submitter clinical testing
Nilou-Genome Lab RCV001548898 SCV001768900 benign Cone-rod dystrophy 3 2021-07-14 criteria provided, single submitter clinical testing
Nilou-Genome Lab RCV001548899 SCV001768901 benign Age-related macular degeneration 2 2021-07-14 criteria provided, single submitter clinical testing
Retina International RCV000085763 SCV000117904 not provided not provided no assertion provided not provided
GenomeConnect, ClinGen RCV000085763 SCV000607280 not provided not provided no assertion provided phenotyping only GenomeConnect assertions are reported exactly as they appear on the patient-provided report from the testing laboratory. GenomeConnect staff make no attempt to reinterpret the clinical significance of the variant.
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen RCV000152715 SCV001742361 benign not specified no assertion criteria provided clinical testing
Human Genetics - Radboudumc,Radboudumc RCV000152715 SCV001957127 benign not specified no assertion criteria provided clinical testing

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