ClinVar Miner

Submissions for variant NM_000368.5(TSC1):c.1098_1105dup (p.Leu369fs)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Pittsburgh Clinical Genomics Laboratory, University of Pittsburgh Medical Center RCV004785140 SCV005397667 likely pathogenic Tuberous sclerosis 1 2024-06-26 criteria provided, single submitter clinical testing This sequence variant is an 8-nucleotide duplication (dupGATCAGGT) of coding positions 1098 through 1105 of the TSC1 gene, resulting in an early termination signal 74 codons downstream of the frameshift at codon Leu369. As it occurs in exon 11 of 23 of the TSC1 gene, this variant is predicted to generate a non-functional allele through either the expression of a truncated protein or a loss of TSC1 expression due to nonsense-mediated decay. This variant is absent from ClinVar and has not been observed in individuals affected by a TSC1-related disorder in the published literature, to our knowledge. This variant is absent from the gnomAD v4.1.0 population database (0/~1614000 alleles). Haploinsufficiency in TSC1 is a known mechanism of disease (PMID: 32917966, 23389244, 17304050). Based upon the evidence, we consider this variant to be likely pathogenic. ACMG Criteria: PM2, PVS1

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