ClinVar Miner

Submissions for variant NM_000368.5(TSC1):c.2698C>T (p.Gln900Ter)

dbSNP: rs397514871
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 4
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Athena Diagnostics RCV000201112 SCV000255861 pathogenic Tuberous sclerosis 1 2013-08-09 criteria provided, single submitter clinical testing
Ambry Genetics RCV002426611 SCV002742707 pathogenic Hereditary cancer-predisposing syndrome 2018-05-18 criteria provided, single submitter clinical testing The p.Q900* pathogenic mutation (also known as c.2698C>T), located in coding exon 19 of the TSC1 gene, results from a C to T substitution at nucleotide position 2698. This changes the amino acid from a glutamine to a stop codon within coding exon 19. This alteration (also described as c.2919C>T) has been reported in individuals with tuberous sclerosis complex (TSC), and functional studies suggested reduced efficiency (Hoogeveen-Westerveld M et al. Biochim. Biophys. Acta, 2010 Sep;1802:774-81). In addition to the clinical data presented in the literature, this alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.
GeneDx RCV002508192 SCV002817874 pathogenic not provided 2022-07-01 criteria provided, single submitter clinical testing Published functional studies demonstrate that this variant reduces TSC1-TSC2 complex formation and inhibition of mTOR activity (Hoogeveen-Westerveld et al., 2010); Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss of function is a known mechanism of disease; Not observed at significant frequency in large population cohorts (gnomAD); This variant is associated with the following publications: (PMID: 15798777, 20547222)
Tuberous sclerosis database (TSC1) RCV000055019 SCV000083237 not provided Tuberous sclerosis syndrome no assertion provided curation

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.