ClinVar Miner

Submissions for variant NM_000383.4(AIRE):c.1480_1483del (p.Arg494fs)

dbSNP: rs1057517072
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Counsyl RCV000409587 SCV000486702 likely pathogenic Polyglandular autoimmune syndrome, type 1 2016-07-20 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000409587 SCV002183465 pathogenic Polyglandular autoimmune syndrome, type 1 2021-06-08 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Arg494Trpfs*26) in the AIRE gene. While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 52 amino acid(s) of the AIRE protein. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate insufficient coverage at this position in the ExAC database. For these reasons, this variant has been classified as Pathogenic. This variant disrupts the C-terminus of the AIRE protein. Other variant(s) that disrupt this region (p.Pro539Leu) have been determined to be pathogenic (PMID: 11836330, 28446514, 17289071, 21295522, 15811934). This suggests that variants that disrupt this region of the protein are likely to be causative of disease. This variant has not been reported in the literature in individuals with AIRE-related conditions. ClinVar contains an entry for this variant (Variation ID: 371185).
National Institute of Allergy and Infectious Diseases - Centralized Sequencing Program, National Institutes of Health RCV000409587 SCV004036178 pathogenic Polyglandular autoimmune syndrome, type 1 2023-09-14 criteria provided, single submitter clinical testing

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