ClinVar Miner

Submissions for variant NM_000384.3(APOB):c.78_82+5del

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Baylor Genetics RCV003333618 SCV004041378 likely pathogenic Familial hypobetalipoproteinemia 1 2023-03-02 criteria provided, single submitter clinical testing
Baylor Genetics RCV003333617 SCV004041479 likely pathogenic Hypercholesterolemia, autosomal dominant, type B 2023-03-02 criteria provided, single submitter clinical testing
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine RCV004017983 SCV004847974 likely pathogenic Hypobetalipoproteinemia 2015-12-22 criteria provided, single submitter clinical testing The c.78_82+5del variant in APOB has not been previously reported in individuals with hypobetalipoproteinemia. Data from large population studies is insufficient to assess the frequency of this variant. This 10 base pair deletion removes the last 5 bases of exon 1 and the first 5 bases of intron 1, which contain the highly conserved +1 and +2 positions in the 5' splice site consensus sequence. This deletion is expected to disrupt splicing and lead to an abnormal or absent protein. Heterozygous loss of function of the APOB gene is associated with hypobetalipoproteinemia (Welty 2014, Burnett 2015). In summary, although additional studies are required to fully establish its clinical significance, the c.78_82+5del variant is likely pathogenic.

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