ClinVar Miner

Submissions for variant NM_000393.5(COL5A2):c.1633C>T (p.Arg545Trp)

gnomAD frequency: 0.00016  dbSNP: rs145258293
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000198486 SCV000249960 uncertain significance not provided 2023-07-28 criteria provided, single submitter clinical testing Has not been previously published as pathogenic or benign to our knowledge; In silico analysis supports that this missense variant has a deleterious effect on protein structure/function
Invitae RCV002228866 SCV000547878 likely benign Ehlers-Danlos syndrome, classic type, 1 2024-01-08 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001139414 SCV001299565 likely benign Ehlers-Danlos syndrome, classic type, 2 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as likely benign is not then subjected to further curation. The score for this variant resulted in a classification of likely benign for this disease.
Genome Diagnostics Laboratory, The Hospital for Sick Children RCV002277497 SCV002565805 uncertain significance Ehlers-Danlos syndrome 2020-09-25 criteria provided, single submitter clinical testing
Ambry Genetics RCV002390513 SCV002702988 likely benign Familial thoracic aortic aneurysm and aortic dissection 2020-03-02 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV003479054 SCV004223169 likely benign not specified 2023-11-27 criteria provided, single submitter clinical testing

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