ClinVar Miner

Submissions for variant NM_000419.5(ITGA2B):c.2063C>T (p.Ala688Val)

dbSNP: rs1245816431
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ClinGen Platelet Disorders Variant Curation Expert Panel, ClinGen RCV001580230 SCV001809866 likely pathogenic Glanzmann thrombasthenia 2024-08-20 reviewed by expert panel curation The ITGA2B missense variant NM_000419.5:c.2063C>T replaces the alanine residue with a valine residue (p.Ala688Val). This variant is very rare in control population databases; the highest population minor allele frequency in gnomAD v4.1.0 is 0.00003332 (2/60020 alleles) in the Admixed American population, which is lower than the ClinGen PD VCEP threshold (<0.0001; PM2_Supporting). It has been observed in homozygosity in one individual (Case 36 in PMID: 28983057; PM3_supporting) with a phenotype specific for Glanzmann's thrombasthenia (GT). Case 36 (in PMID: 28983057) meets all requirements for PP4 at an upgraded strength of strong (PP4_strong): bleeding phenotype strongly indicative of Glanzmann's thrombasthenia; impaired aggregation to at least two agonists, but normal or only mildly reduced agglutination with ristocetin; markedly reduced expression of GPIIb/IIIa (confirmed to be <20% by personal communication with author); direct sequencing of all exons, untranslated regions, and flanking regions of ITGA2B and ITGB3. In summary, this variant meets criteria to be classified as likely pathogenic for GT. GT-specific criteria applied: PM2_supporting, PM3_supporting, PP4_strong.

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