ClinVar Miner

Submissions for variant NM_000419.5(ITGA2B):c.2800G>T (p.Val934Phe)

dbSNP: rs77458039
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ClinGen Platelet Disorders Variant Curation Expert Panel, ClinGen RCV001290459 SCV001478493 likely pathogenic Glanzmann thrombasthenia 2024-06-06 reviewed by expert panel curation The ITGA2B missense variant NM_000419.5:c.2800G>T replaces the valine residue with a phenylalanine residue (p.Val934Phe). All requirements for PP4 at an upgraded strength of strong (PP4_Strong) are met by proband GT20 (PMID 25728920): epistaxis; absent platelet aggregation in response to physiologic agonists except normal response to ristocetin; flow cytometry showed 10-20% expression of αIIbβ3; direct sequencing of all exons and splice sites of ITGA2B and ITGB3, as well as upstream regions. This variant has also been observed in a homozygous proband (PMID: 34347927) and a proband (PMID: 25728920) who also harbors a second ITGA2B variant (c.1413C>G, p.Tyr471Ter) previously classified by the VCEP as pathogenic (phase unconfirmed) (PM3). Furthermore, this variant has not been observed in population databases (absent from gnomAD v4.1.0; PM2_supporting). Finally, a functional study of this variant has been reported (PMID: 20020534; flow cytometric detection of αIIb, β3, and αIIbβ3 positive cells following transient transfection of ITGA2B cDNA carrying this variant), finding approximately 20% positive cells for the β3 subunit compared to WT (PS3_supporting). In summary, this variant meets criteria to be classified as likely pathogenic for GT. GT-specific criteria applied: PS3_supporting, PM2_supporting, PM3, and PP4_strong.

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