Total submissions: 1
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Clin |
RCV001290465 | SCV001478501 | likely pathogenic | Glanzmann thrombasthenia | 2023-11-02 | reviewed by expert panel | curation | The NM_000419.5(ITGA2B):c.571T>G (p.Phe191Val) variant has been reported in at least 1 compound heterozygous GT proband (PMID:25728920) with a phenotype highly specific to Glanzmann thrombasthenia with mucocutaneous bleeding, impaired aggregation with all agonists except ristocetin, and reduced surface expression of αIIbβ3 measured by flow cytometry (PP4_Strong). It is absent from population databases, including gnomADv2.1.1 (PM2_supporting). Splicing predictors, HSF and SpliceAI, agree that there is activation of a cryptic donor site with potential alteration of splicing. This was confirmed by minigene study in PMID: 20020534; sequencing revealed the most common transcript contained a 4-bp deletion that introduced a frameshift and a premature stop codon in exon 7 of 30 (PM4). In summary, this variant meets criteria to be classified as likely pathogenic for GT. GT-specific criteria applied: PM2_Supporting, PM4, and PP4_Strong. |