ClinVar Miner

Submissions for variant NM_000448.3(RAG1):c.416G>T (p.Gly139Val)

gnomAD frequency: 0.00001  dbSNP: rs140648865
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Blueprint Genetics RCV000788309 SCV000927368 uncertain significance not provided 2017-08-07 criteria provided, single submitter clinical testing
Invitae RCV003106065 SCV003783159 uncertain significance Combined immunodeficiency with skin granulomas; Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive 2022-09-26 criteria provided, single submitter clinical testing This sequence change replaces glycine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 139 of the RAG1 protein (p.Gly139Val). This variant is present in population databases (rs140648865, gnomAD 0.002%). This variant has not been reported in the literature in individuals affected with RAG1-related conditions. ClinVar contains an entry for this variant (Variation ID: 636468). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt RAG1 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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