ClinVar Miner

Submissions for variant NM_000481.4(AMT):c.503G>C (p.Arg168Thr)

gnomAD frequency: 0.00002  dbSNP: rs200058579
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 2
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV000342966 SCV000445377 uncertain significance Non-ketotic hyperglycinemia 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Invitae RCV000342966 SCV002286607 uncertain significance Non-ketotic hyperglycinemia 2021-09-17 criteria provided, single submitter clinical testing This sequence change replaces arginine with threonine at codon 168 of the AMT protein (p.Arg168Thr). The arginine residue is weakly conserved and there is a moderate physicochemical difference between arginine and threonine. This variant is present in population databases (rs200058579, ExAC 0.001%). This variant has not been reported in the literature in individuals with AMT-related conditions. ClinVar contains an entry for this variant (Variation ID: 346033). Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.