Total submissions: 6
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Soonchunhyang University Bucheon Hospital, |
RCV000490264 | SCV000267306 | uncertain significance | Branchiootorenal syndrome 1 | 2016-03-18 | criteria provided, single submitter | reference population | |
Laboratory for Molecular Medicine, |
RCV000825655 | SCV000967026 | uncertain significance | not specified | 2018-03-07 | criteria provided, single submitter | clinical testing | The p.Gly135Ser variant in EYA1 has been reported in at least Japanese individua l with hearing loss (Miyagawa 2013) and has also been reported in ClinVar (Varia tion ID#225351). This variant has been identified in 0.06% (11/17210) of East As ian chromosomes by the Genome Aggregation Database (gnomAD, http://gnomad.broadi nstitute.org; dbSNP rs747476629); however the frequency is not high enough to ru le out a pathogenic role. Computational prediction tools and conservation analys is suggest that the p.Gly135Ser variant may impact the protein, though this info rmation is not predictive enough to determine pathogenicity. In summary, the cli nical significance of the p.Gly135Ser variant is uncertain. ACMG/AMP Criteria ap plied: PP3 |
Illumina Laboratory Services, |
RCV001159420 | SCV001321134 | likely benign | Branchiootic syndrome 1 | 2017-04-28 | criteria provided, single submitter | clinical testing | This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. The evidence from the literature, in combination with allele frequency data from public databases where available, was sufficient to determine this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign. |
Illumina Laboratory Services, |
RCV001159421 | SCV001321135 | benign | Otofaciocervical syndrome 1 | 2017-04-28 | criteria provided, single submitter | clinical testing | This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases was too high to be consistent with this variant causing disease. Therefore, this variant is classified as benign. |
Invitae | RCV001853384 | SCV002277349 | likely benign | Melnick-Fraser syndrome | 2022-12-20 | criteria provided, single submitter | clinical testing | |
Gene |
RCV002508199 | SCV002818025 | uncertain significance | not provided | 2022-07-01 | criteria provided, single submitter | clinical testing | Reported in a patient with branchiootorenal spectrum disorder in published literature (Wu et al., 2019); clinical details for this individual are not available; Reported in multiple patients with hearing loss in published literature (Minyagawa et al., 2013); clinical information for these patients was not available; In silico analysis supports that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 34666446, 31738409, 23967202, 31581539) |