Total submissions: 3
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Color Diagnostics, |
RCV000775603 | SCV000909967 | likely benign | Familial hypercholesterolemia | 2018-03-11 | criteria provided, single submitter | clinical testing | |
Women's Health and Genetics/Laboratory Corporation of America, |
RCV000780375 | SCV000917577 | benign | not specified | 2018-04-23 | criteria provided, single submitter | clinical testing | Variant summary: LDLR c.694+9G>A alters a non-conserved nucleotide located close to a canonical splice site and therefore could affect mRNA splicing. 3/5 computational tools predict some impact on normal splicing. However, these predictions have yet to be confirmed by functional studies. The observed variant frequency within African control individuals in the gnomAD database is approximately 1.2 fold of the estimated maximal expected allele frequency for a pathogenic variant in LDLR causing Familial Hypercholesterolemia phenotype (0.0013), strongly suggesting that the variant is a benign polymorphism found primarily in populations of African origin. To our knowledge, no occurrence of c.694+9G>A in individuals affected with Familial Hypercholesterolemia and no experimental evidence demonstrating its impact on protein function have been reported. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014. Based on the evidence outlined above, the variant was classified as benign. |
Invitae | RCV000775603 | SCV001006705 | benign | Familial hypercholesterolemia | 2024-01-22 | criteria provided, single submitter | clinical testing |