ClinVar Miner

Submissions for variant NM_000527.5(LDLR):c.901G>T (p.Asp301Tyr)

dbSNP: rs879254713
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
LDLR-LOVD, British Heart Foundation RCV000237401 SCV000295039 likely pathogenic Hypercholesterolemia, familial, 1 2016-03-25 criteria provided, single submitter literature only
Invitae RCV002518481 SCV003442668 pathogenic Familial hypercholesterolemia 2022-09-23 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Asp301 amino acid residue in LDLR. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 9090532, 11600564, 15241806, 16250003, 25461735, 25463123). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt LDLR protein function. ClinVar contains an entry for this variant (Variation ID: 251512). This variant is also known as D280Y. This missense change has been observed in individuals with familial hypercholesterolemia (PMID: 12417285, 31491741). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces aspartic acid, which is acidic and polar, with tyrosine, which is neutral and polar, at codon 301 of the LDLR protein (p.Asp301Tyr).

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