ClinVar Miner

Submissions for variant NM_000528.4(MAN2B1):c.1351G>T (p.Gly451Cys)

gnomAD frequency: 0.00001  dbSNP: rs368899357
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000206900 SCV001390765 pathogenic Deficiency of alpha-mannosidase 2023-11-24 criteria provided, single submitter clinical testing This sequence change replaces glycine, which is neutral and non-polar, with cysteine, which is neutral and slightly polar, at codon 451 of the MAN2B1 protein (p.Gly451Cys). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This missense change has been observed in individual(s) with mannosidosis (PMID: 22161967). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. ClinVar contains an entry for this variant (Variation ID: 208266). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on MAN2B1 protein function. Experimental studies have shown that this missense change affects MAN2B1 function (PMID: 21505070, 22161967). For these reasons, this variant has been classified as Pathogenic.
Genome-Nilou Lab RCV000206900 SCV002014387 pathogenic Deficiency of alpha-mannosidase 2021-09-05 criteria provided, single submitter clinical testing
Baylor Genetics RCV000206900 SCV004191873 pathogenic Deficiency of alpha-mannosidase 2024-03-21 criteria provided, single submitter clinical testing
ClinVar Staff, National Center for Biotechnology Information (NCBI) RCV000206900 SCV000243972 uncertain significance Deficiency of alpha-mannosidase 2012-06-07 no assertion criteria provided literature only

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