ClinVar Miner

Submissions for variant NM_000535.7(PMS2):c.142del (p.Asp48fs)

dbSNP: rs1064794173
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000478389 SCV000568066 pathogenic not provided 2020-11-04 criteria provided, single submitter clinical testing Frameshift variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Not observed in large population cohorts (Lek et al., 2016); Truncating variants in this gene are considered pathogenic by a well-established clinical consortium and/or database; Observed in individuals with a personal or family history consistent with pathogenic variants in this gene (Roberts 2018); This variant is associated with the following publications: (PMID: 29345684)
Invitae RCV000800178 SCV000939878 pathogenic Hereditary nonpolyposis colorectal neoplasms 2018-08-20 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Asp48Metfs*9) in the PMS2 gene. It is expected to result in an absent or disrupted protein product. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with PMS2-related disease. ClinVar contains an entry for this variant (Variation ID: 419888). Loss-of-function variants in PMS2 are known to be pathogenic (PMID: 21376568, 24362816). For these reasons, this variant has been classified as Pathogenic.

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