ClinVar Miner

Submissions for variant NM_000535.7(PMS2):c.1938del (p.Lys647fs)

dbSNP: rs2128720948
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Quest Diagnostics Nichols Institute San Juan Capistrano RCV001801018 SCV002046248 likely pathogenic not provided 2020-09-28 criteria provided, single submitter clinical testing This frameshift variant alters the translational reading frame of the PMS2 mRNA and is predicted to cause the premature termination of PMS2 protein synthesis. To the best of our knowledge, the variant has not been reported in the published literature. Based on the available information, we predict that the variant is likely pathogenic.
Ambry Genetics RCV002406890 SCV002719268 pathogenic Hereditary cancer-predisposing syndrome 2020-03-08 criteria provided, single submitter clinical testing The c.1938delG pathogenic mutation, located in coding exon 11 of the PMS2 gene, results from a deletion of one nucleotide at nucleotide position 1938, causing a translational frameshift with a predicted alternate stop codon (p.K647Sfs*18). This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.
Myriad Genetics, Inc. RCV003451939 SCV004188661 pathogenic Lynch syndrome 4 2023-09-21 criteria provided, single submitter clinical testing This variant is considered pathogenic. This variant creates a frameshift predicted to result in premature protein truncation.
Baylor Genetics RCV003451939 SCV004207861 likely pathogenic Lynch syndrome 4 2023-03-30 criteria provided, single submitter clinical testing

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