ClinVar Miner

Submissions for variant NM_000535.7(PMS2):c.2016del (p.Met672fs)

dbSNP: rs1554295967
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000554077 SCV000625578 pathogenic Hereditary nonpolyposis colorectal neoplasms 2023-11-13 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Met672Ilefs*16) in the PMS2 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in PMS2 are known to be pathogenic (PMID: 21376568, 24362816). The frequency data for this variant in the population databases (gnomAD) is considered unreliable due to the presence of homologous sequence, such as pseudogenes or paralogs, in the genome. This premature translational stop signal has been observed in individual(s) with clinical features of Lynch syndrome (PMID: 28874130). ClinVar contains an entry for this variant (Variation ID: 455681). For these reasons, this variant has been classified as Pathogenic.
Myriad Genetics, Inc. RCV003139749 SCV003806546 pathogenic Lynch syndrome 4 2023-01-12 criteria provided, single submitter clinical testing This variant is considered pathogenic. This variant creates a frameshift predicted to result in premature protein truncation.

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