ClinVar Miner

Submissions for variant NM_000535.7(PMS2):c.250+8G>A

dbSNP: rs1057520511
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000429490 SCV000515780 likely benign not specified 2016-06-06 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
University of Washington Department of Laboratory Medicine, University of Washington RCV000758694 SCV000887467 benign Lynch syndrome 2018-05-01 criteria provided, single submitter clinical testing PMS2 NM_000535.5:c.250+8G>A has a 0.9% probability of pathogenicity based on combining prior probability from public data with a likelihood ratio of 0.16 to 1, generated from evidence of seeing this as a somatic mutation in a tumor with loss of heterozygosity at the PMS2 locus. See Shirts et al 2018, PMID 29887214.
Invitae RCV001504923 SCV001709810 likely benign Hereditary nonpolyposis colorectal neoplasms 2023-07-20 criteria provided, single submitter clinical testing
Sema4, Sema4 RCV002258886 SCV002530311 likely benign Hereditary cancer-predisposing syndrome 2020-11-05 criteria provided, single submitter curation

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