Total submissions: 4
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Ambry Genetics | RCV000216389 | SCV000277606 | uncertain significance | Hereditary cancer-predisposing syndrome | 2020-02-26 | criteria provided, single submitter | clinical testing | The p.F104S variant (also known as c.311T>C), located in coding exon 4 of the PMS2 gene, results from a T to C substitution at nucleotide position 311. The phenylalanine at codon 104 is replaced by serine, an amino acid with highly dissimilar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. |
Labcorp Genetics |
RCV001854686 | SCV002251236 | uncertain significance | Hereditary nonpolyposis colorectal neoplasms | 2022-08-23 | criteria provided, single submitter | clinical testing | This variant is not present in population databases (gnomAD no frequency). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt PMS2 protein function. ClinVar contains an entry for this variant (Variation ID: 233264). This variant has not been reported in the literature in individuals affected with PMS2-related conditions. This sequence change replaces phenylalanine, which is neutral and non-polar, with serine, which is neutral and polar, at codon 104 of the PMS2 protein (p.Phe104Ser). |
Women's Health and Genetics/Laboratory Corporation of America, |
RCV002509321 | SCV002819420 | uncertain significance | not specified | 2022-12-10 | criteria provided, single submitter | clinical testing | |
Baylor Genetics | RCV003462521 | SCV004207801 | uncertain significance | Lynch syndrome 4 | 2023-06-29 | criteria provided, single submitter | clinical testing |