ClinVar Miner

Submissions for variant NM_000540.3(RYR1):c.1204A>G (p.Met402Val)

gnomAD frequency: 0.00001  dbSNP: rs766763626
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000704273 SCV000833215 uncertain significance RYR1-related disorder 2021-08-13 criteria provided, single submitter clinical testing This sequence change replaces methionine with valine at codon 402 of the RYR1 protein (p.Met402Val). The methionine residue is moderately conserved and there is a small physicochemical difference between methionine and valine. This variant is present in population databases (rs766763626, ExAC 0.006%). This variant has not been reported in the literature in individuals affected with RYR1-related conditions. ClinVar contains an entry for this variant (Variation ID: 580665). Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. This variant disrupts the p.Arg407 amino acid residue in RYR1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 17033962, 17483490, 20583297). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002507235 SCV002817027 uncertain significance Central core myopathy; Malignant hyperthermia, susceptibility to, 1; Congenital multicore myopathy with external ophthalmoplegia; Congenital myopathy with fiber type disproportion; King Denborough syndrome 2021-10-16 criteria provided, single submitter clinical testing
Revvity Omics, Revvity RCV003130018 SCV003814466 uncertain significance not provided 2022-12-19 criteria provided, single submitter clinical testing

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