ClinVar Miner

Submissions for variant NM_000543.5(SMPD1):c.1688G>A (p.Arg563Gln)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV003119583 SCV003794033 uncertain significance Niemann-Pick disease, type B; Niemann-Pick disease, type A 2022-09-01 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with glutamine, which is neutral and polar, at codon 563 of the SMPD1 protein (p.Arg563Gln). This variant is present in population databases (rs767240635, gnomAD 0.02%). This variant has not been reported in the literature in individuals affected with SMPD1-related conditions. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt SMPD1 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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