ClinVar Miner

Submissions for variant NM_000546.5(TP53):c.399G>A (p.Met133Ile) (rs1064795139)

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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Counsyl RCV000662907 SCV000785831 uncertain significance Li-Fraumeni syndrome 1 2017-12-14 criteria provided, single submitter clinical testing
GeneDx RCV000484833 SCV000570644 uncertain significance not provided 2016-06-13 criteria provided, single submitter clinical testing This variant is denoted TP53 c.399G>A at the cDNA level, p.Met133Ile (M133I) at the protein level, and results in the change of a Methionine to an Isoleucine (ATG>ATA). This variant has not, to our knowledge, been published as a germline pathogenic or benign variant. TP53 Met133Ile is reported as having functional transactivation capacities in the International Agency for Research on Cancer TP53 database based on functional assays by Kato et al. (2003). This variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, suggesting it is not a common benign variant in these populations. Since Methionine and Isoleucine share similar properties, this is considered a conservative amino acid substitution. TP53 Met133Ile occurs at a position where amino acids with properties similar to Methionine are tolerated across species and is located within the DNA binding domain (Bode 2004). In silico analyses are inconsistent regarding the effect this variant may have on protein structure and function. Based on currently available evidence, it is unclear whether TP53 Met133Ile is a pathogenic or benign variant. We consider it to be a variant of uncertain significance.

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