ClinVar Miner

Submissions for variant NM_000546.6(TP53):c.*6T>A

gnomAD frequency: 0.00005  dbSNP: rs369567704
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000586669 SCV000527392 likely benign not provided 2023-01-25 criteria provided, single submitter clinical testing See Variant Classification Assertion Criteria.
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000586669 SCV000697421 uncertain significance not provided 2017-05-15 criteria provided, single submitter clinical testing Variant summary: The TP53 c.*6T>A variant involves the alteration of a non-conserved nucleotide in the 3'-UTR. One in silico tool predicts a benign outcome for this variant. This variant was found in 3/121410 control chromosomes, predominantly observed in the African subpopulation at a frequency of 0.0002884 (3/10404). This frequency is about 7 times the estimated maximal expected allele frequency of a pathogenic TP53 variant (0.0000398), suggesting this is likely a benign polymorphism found primarily in the populations of African origin. One clinical diagnostic laboratory classified this variant as likely benign. The variant of interest has not, to our knowledge, been reported in affected individuals via publications and/or reputable databases/clinical diagnostic laboratories; nor evaluated for functional impact by in vivo/vitro studies. Because of the absence of clinical information and the lack of functional studies, the variant is classified as a variant of uncertain significance (VUS)-possibly benign until additional information becomes available.
Color Diagnostics, LLC DBA Color Health RCV001177928 SCV001342241 likely benign Hereditary cancer-predisposing syndrome 2016-04-22 criteria provided, single submitter clinical testing
Quest Diagnostics Nichols Institute San Juan Capistrano RCV000586669 SCV004221341 likely benign not provided 2022-05-12 criteria provided, single submitter clinical testing

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