ClinVar Miner

Submissions for variant NM_000548.5(TSC2):c.1096G>C (p.Glu366Gln)

dbSNP: rs45517148
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000644146 SCV000765836 benign Tuberous sclerosis 2 2023-10-12 criteria provided, single submitter clinical testing
GeneDx RCV002282288 SCV002571495 uncertain significance not provided 2022-09-08 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Ambry Genetics RCV002424465 SCV002731910 uncertain significance Hereditary cancer-predisposing syndrome 2024-08-28 criteria provided, single submitter clinical testing The p.E366Q variant (also known as c.1096G>C), located in coding exon 10 of the TSC2 gene, results from a G to C substitution at nucleotide position 1096. The glutamic acid at codon 366 is replaced by glutamine, an amino acid with highly similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Based on the available evidence, the clinical significance of this variant remains unclear.
Fulgent Genetics, Fulgent Genetics RCV002483858 SCV002791662 uncertain significance Lymphangiomyomatosis; Isolated focal cortical dysplasia type II; Tuberous sclerosis 2 2022-04-21 criteria provided, single submitter clinical testing
All of Us Research Program, National Institutes of Health RCV004004001 SCV004817073 uncertain significance Tuberous sclerosis syndrome 2023-11-30 criteria provided, single submitter clinical testing This missense variant replaces glutamic acid with glutamine at codon 366 of the TSC2 protein. Computational prediction suggests that this variant may not impact protein structure and function (internally defined REVEL score threshold <= 0.5, PMID: 27666373). To our knowledge, functional studies have not been reported for this variant. This variant has not been reported in individuals affected with tuberous sclerosis complex in the literature. This variant has been identified in 1/250732 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance.

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