ClinVar Miner

Submissions for variant NM_000548.5(TSC2):c.160C>T (p.Leu54Phe)

dbSNP: rs1394176023
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001057035 SCV001221504 uncertain significance Tuberous sclerosis 2 2022-12-15 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt TSC2 protein function. ClinVar contains an entry for this variant (Variation ID: 852430). This variant has not been reported in the literature in individuals affected with TSC2-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces leucine, which is neutral and non-polar, with phenylalanine, which is neutral and non-polar, at codon 54 of the TSC2 protein (p.Leu54Phe).
Ambry Genetics RCV002393278 SCV002703117 uncertain significance Hereditary cancer-predisposing syndrome 2021-10-19 criteria provided, single submitter clinical testing The p.L54F variant (also known as c.160C>T), located in coding exon 2 of the TSC2 gene, results from a C to T substitution at nucleotide position 160. The leucine at codon 54 is replaced by phenylalanine, an amino acid with highly similar properties. This amino acid position is well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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