ClinVar Miner

Submissions for variant NM_000548.5(TSC2):c.1783C>T (p.Gln595Ter)

dbSNP: rs45517199
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Athena Diagnostics Inc RCV000993366 SCV001146275 pathogenic not provided 2018-12-18 criteria provided, single submitter clinical testing The variant creates a premature nonsense codon, and is therefore predicted to result in the loss of a functional protein. Found in at least one symptomatic patient, and not found in general population data.
GeneDx RCV000993366 SCV002498862 pathogenic not provided 2022-03-22 criteria provided, single submitter clinical testing Reported previously in patients with a clinical diagnosis of TSC (Dabora et al., 2001; Rendtorff et al., 2005); Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Not observed in large population cohorts (gnomAD); This variant is associated with the following publications: (PMID: 25525159, 11112665, 16114042, 15798777, 34680378, 30747827)
Invitae RCV003511983 SCV004296647 pathogenic Tuberous sclerosis 2 2023-01-15 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. ClinVar contains an entry for this variant (Variation ID: 49174). This premature translational stop signal has been observed in individual(s) with clinical features of tuberous sclerosis complex (PMID: 11112665). This variant is not present in population databases (gnomAD no frequency). This sequence change creates a premature translational stop signal (p.Gln595*) in the TSC2 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in TSC2 are known to be pathogenic (PMID: 10205261, 17304050).
Tuberous sclerosis database (TSC2) RCV000042430 SCV000066221 not provided Tuberous sclerosis syndrome no assertion provided curation

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