ClinVar Miner

Submissions for variant NM_000548.5(TSC2):c.4958C>T (p.Ser1653Phe)

dbSNP: rs45517383
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001242240 SCV001415311 uncertain significance Tuberous sclerosis 2 2022-12-06 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Experimental studies have shown that this missense change affects TSC2 function (PMID: 22903760). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on TSC2 protein function. ClinVar contains an entry for this variant (Variation ID: 49336). This missense change has been observed in individual(s) with clinical features of tuberous sclerosis (PMID: 14756965, 15024740). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces serine, which is neutral and polar, with phenylalanine, which is neutral and non-polar, at codon 1653 of the TSC2 protein (p.Ser1653Phe).
Tuberous sclerosis database (TSC2) RCV000042596 SCV000066390 not provided Tuberous sclerosis syndrome no assertion provided curation

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