ClinVar Miner

Submissions for variant NM_000552.5(VWF):c.3569G>A (p.Cys1190Tyr)

dbSNP: rs1591865026
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
NIHR Bioresource Rare Diseases, University of Cambridge RCV000851644 SCV000899684 likely pathogenic von Willebrand disease type 2 2019-02-01 criteria provided, single submitter research
ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology RCV002222625 SCV002500922 likely pathogenic von Willebrand disease type 1 criteria provided, single submitter clinical testing
Laboratory of Hematology, Radboud University Medical Center RCV000851644 SCV002546284 likely pathogenic von Willebrand disease type 2 2020-12-10 criteria provided, single submitter research
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV003317360 SCV004020736 uncertain significance not specified 2023-06-26 criteria provided, single submitter clinical testing Variant summary: VWF c.3569G>A (p.Cys1190Tyr) results in a non-conservative amino acid change located in the trypsin inhibitor-like, cysteine rich domain (IPR002919) of the encoded protein sequence. Five of five in-silico tools predict a damaging effect of the variant on protein function. The variant was absent in 251494 control chromosomes (gnomAD). c.3569G>A has been reported in the literature in the heterozygous state in individuals affected with or suspected of autosomal dominant Von Willebrand Disease (e.g. Schneppenheim_2010, Downes_2019, de Jong_2020). These data indicate that the variant may be associated with disease. Publications examining the functional impact of the variant in a heterozygous patient found that it resulted in an increased retention of unprocessed VWF in the ER compared to the WT protein, however it was not clear whether this effect was at a level sufficient to cause disease as although the patient had reduced high molecular weight VWF multimers in plasma, platelet multimers were found to be indistinguishable from healthy controls (de Jong_2020, Swinkels_2021). The following publications have been ascertained in the context of this evaluation (PMID: 31064749, 20351307, 32803740, 34532631). Two submitters have cited clinical-significance assessments for this variant to ClinVar after 2014 and both classified the variant as likely pathogenic. Based on the evidence outlined above, the variant was classified as VUS-possibly pathogenic.
NIHR Bioresource Rare Diseases, University of Cambridge RCV001003907 SCV001161842 likely pathogenic Reduced von Willebrand factor activity no assertion criteria provided research

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