Total submissions: 4
| Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
|---|---|---|---|---|---|---|---|---|
| Illumina Laboratory Services, |
RCV000275447 | SCV000351326 | benign | Autoimmune lymphoproliferative syndrome type 1 | 2018-01-12 | criteria provided, single submitter | clinical testing | This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease. |
| Labcorp Genetics |
RCV000275447 | SCV001028544 | likely benign | Autoimmune lymphoproliferative syndrome type 1 | 2024-01-22 | criteria provided, single submitter | clinical testing | |
| Center for Genomics, |
RCV000275447 | SCV001190393 | uncertain significance | Autoimmune lymphoproliferative syndrome type 1 | 2019-11-19 | criteria provided, single submitter | clinical testing | FASLG NM_000639.2 exon 1 p.Leu94Val (c.280T>G): This variant has not been reported in the literature but is present in 0.9% (196/19948) of East Asian alleles in the Genome Aggregation Database (https://gnomad.broadinstitute.org/variant/1-172628621-T-G?dataset=gnomad_r2_1). This variant is present in ClinVar (Variation ID:293735). Evolutionary conservation and computational predictive tools suggest that this variant may impact the protein. In summary, data on this variant is insufficient for disease classification. Therefore, the clinical significance of this variant is uncertain. |
| Gene |
RCV001764258 | SCV002007932 | uncertain significance | not provided | 2019-08-20 | criteria provided, single submitter | clinical testing | In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously published as pathogenic or benign to our knowledge |