ClinVar Miner

Submissions for variant NM_000642.3(AGL):c.958+1G>A

dbSNP: rs1553184657
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Counsyl RCV000664741 SCV000788749 pathogenic Glycogen storage disease type III 2017-01-03 criteria provided, single submitter clinical testing
Invitae RCV000664741 SCV001419940 pathogenic Glycogen storage disease type III 2021-06-23 criteria provided, single submitter clinical testing This variant is not present in population databases (ExAC no frequency). This sequence change affects a donor splice site in intron 7 of the AGL gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product. Disruption of this splice site has been observed in individual(s) with glycogen storage disease III (PMID: 19834502, 25451950, 26984562). ClinVar contains an entry for this variant (Variation ID: 550103). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in AGL are known to be pathogenic (PMID: 19299494). For these reasons, this variant has been classified as Pathogenic.
Genome-Nilou Lab RCV000664741 SCV002055475 pathogenic Glycogen storage disease type III 2021-07-15 criteria provided, single submitter clinical testing

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