ClinVar Miner

Submissions for variant NM_000719.7(CACNA1C):c.5599C>T (p.Arg1867Trp)

gnomAD frequency: 0.00004  dbSNP: rs369421219
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001218818 SCV001390722 uncertain significance Long QT syndrome 2024-06-06 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 1867 of the CACNA1C protein (p.Arg1867Trp). This variant is present in population databases (rs369421219, gnomAD 0.03%). This variant has not been reported in the literature in individuals affected with CACNA1C-related conditions. ClinVar contains an entry for this variant (Variation ID: 180286). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt CACNA1C protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002345528 SCV002647455 likely benign Cardiovascular phenotype 2021-12-29 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Blueprint Genetics RCV000157126 SCV000206849 uncertain significance Ventricular tachycardia 2014-06-26 no assertion criteria provided clinical testing

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